Create a matrix of output plots from a coevfit object

Source: R/plot.R

A pairs method that is customized for MCMC output.

# S3 method for class 'coevfit'
pairs(x, parameters = NULL, ...)

Arguments

x

An object of class coevfit

parameters

If NULL (default), the function returns plots for the main parameters from the model (the selection matrix "A", the drift matrix "Q", and the continuous time intercepts "b"). Otherwise, a character vector declaring the parameters to plot (strictly case-sensitive).

...

Further arguments to be passed to mcmc_pairs.

Value

A matrix of output plots

Details

For a detailed description see mcmc_pairs.

See also

plot.coevfit

Author

Scott Claessens scott.claessens@gmail.com

Examples

if (FALSE) { # \dontrun{
# fit dynamic coevolutionary model
fit <- coev_fit(
  data = authority$data,
  variables = list(
    political_authority = "ordered_logistic",
    religious_authority = "ordered_logistic"
  ),
  id = "language",
  tree = authority$phylogeny,
  # additional arguments for cmdstanr::sample()
  chains = 4,
  parallel_chains = 4,
  seed = 1
  )

# print pairs plot
pairs(fit)
} # }